PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6067_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 176aa    MW: 19381.7 Da    PI: 7.8082
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6067_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-183282155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++++GVr +  +g+Wv+eIr+p   gk+ r++lg+f t+e+Aa+a++ a+++++g
  RrC6067_p1 32 PHFRGVRKRQ-WGKWVSEIREP---GKKSRIWLGTFATPEMAARAHDVAALAIKG 82
                689****888.**********8...557**********************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.53E-333292No hitNo description
PfamPF008478.9E-133282IPR001471AP2/ERF domain
PROSITE profilePS5103222.6163390IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-313391IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-213391IPR016177DNA-binding domain
SMARTSM003801.3E-383396IPR001471AP2/ERF domain
PRINTSPR003674.4E-103445IPR001471AP2/ERF domain
PRINTSPR003674.4E-105672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MQDSSLPRSP APERTGKNSK TKNEQNSVSK HPHFRGVRKR QWGKWVSEIR EPGKKSRIWL  60
GTFATPEMAA RAHDVAALAI KGVSAHLNFP ELASHLPRPA SADPKDIQAA ATAAALEWKP  120
PESPSSTASS SVTSSSVVAD DAFCDLPDLS LDVNDHKVDG FWDSFPYEEP FFMKHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A2e-162990163ATERF1
2gcc_A2e-162990163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145506.15e-92PREDICTED: ethylene-responsive transcription factor ERF039-like
RefseqXP_013733776.15e-92PREDICTED: ethylene-responsive transcription factor ERF039
SwissprotQ9SUK84e-84ERF39_ARATH; Ethylene-responsive transcription factor ERF039
TrEMBLM4FG655e-92M4FG65_BRARP; Uncharacterized protein
STRINGBra040092.1-P1e-91(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.12e-80ERF family protein